Data Science

8 days ago

Hello all, I have been working on my 16S amplcon data for a while now and I have gotten to the last of the downstream analysis where I am stuck and I dont know hwo to move forward. I have data set that I woud say loks like a full factorial; Genotype (4 levels; G1, G2, G3, & G4), Day (3 levels; D1, D2 & D3), Treatment (6 lev...

4 months ago

As a PLATFORM for SYSTEMS BIOLOGY, the open-source project LIFE123 (https://life123.science) offers a growing set of tools to wrestle with the complications of numerical solutions to complex dynamical systems, such as cycles of biochemical reactions. ONLY 1/2 OF THE BATTLE, is to offer functions to set up and simulate webs...

4 months ago

CYCLES of reactions are the bread-and-butter of biological networks... Explore them with just a few lines of Python code! (optionally in a 1-click hosted environment 😀 ) Pleased to announce version Beta 21 of the COLLABORATIVE OPEN-SOURCE project LIFE123 (https://life123.science) : Computational Systems Biology, with em...

5 months ago

Pleased to announce version Beta 19 of the COLLABORATIVE OPEN-SOURCE project LIFE123 (https://life123.science) : Computational Systems Biology, with emphasis on Dynamical Models (quantitative reactomics with spatial awareness.) This new version brings Adaptive Variable Time Resolution for coupled reactions (to ration c...

8 months ago

Plant phenotypic analysis software is a critical component of a Plant Phenotyping Research Toolbox (PPRT), a set of tools for the analysis of plant phenotypes in the context of a particular research project that relies on imaging. Currently, there are many software packages that provide both plant analysis and phenomics dat...

9 months ago

It might be hard to believe, but the Python programming language isn’t new and is actually more mature than the Java™ language and even HTTP. Unfortunately, however, one of the common misconceptions about Python that continues to persist is that Python is slow. This misconception is rooted in the fact that interactive vers...

over 1 year ago

Data The data analysed in this study were retrieved from the Web of Science and Scopus databases. These databases are considered to have a comprehensive archive of the scientific literature and have been widely used, particularly for the analysis of scientific publications.17 The search strings were: “socio-hydrological* r...

How to select differential abundant ASVs/ Keggs from ancombc2 for enrichment analysis

How to select differential abundant ASVs/ Keggs from ancombc2 for enrichment analysis

Open-source platform for Systems Bio : "Life123"

Open-source platform for Systems Bio : "Life123"

Cycles of reactions : in-silico experiments on v. Beta21 of open-source Systems Bio platform Life123

Cycles of reactions : in-silico experiments on v. Beta21 of open-source Systems Bio platform Life123

Collaborative platform for in-silico experiments : Systems Biology

Collaborative platform for in-silico experiments : Systems Biology

Plant image analysis is a crucial step in the phenotypic characterization of complex plants' physiological traits while working with large and demanding datasets. Here we present a collection of open source applications that can be scaled up

Plant image analysis is a crucial step in the phenotypic characterization of complex plants' physiological traits while working with large and demanding datasets. Here we present a collection of open source applications that can be scaled up

Python is very good for programming in science

Python is very good for programming in science

Data and Bibliometric analysis methods

Data and Bibliometric analysis methods