Conan Claros
4 days ago

VCF to GENEPOP FORMAT

VCF to GENEPOP FORMAT

Hi people :3 I'm searching to see if there is a program to transform VCF files to genepop format (.gen). Anyone knows a program or maybe have a script to do this? Thanks for your time :3

Adapter trimming in 10x Data and CellRanger Make Counts Expected Cells

Myrsini Gounari
8 days ago
Question

Methods to filter data for constructing a gene network

Methods to filter data for constructing a gene network

Hello guys! I have a matrix with gene expression counts (rows -> genes, columns -> samples). I have applied the Pearson correlation to these data because I want to generate an adjacency matrix. My purpose is to apply graph based methods on the network that it will be constructed. My main problem is that the adjacency matr...
Bioinformatics Homo sapiens
Abdullahi Muhammad
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How to select differential abundant ASVs/ Keggs from ancombc2 for enrichment analysis

Zachary Martinez
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Pro Lab TipMethod

Top 10 most useful (to me) commands when working with FASTA files

Giuseppe D'Agostino
16 days ago
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Is your UMAP lying to you?

Is your UMAP lying to you?

Intro: to see is to know Humans are very visual creatures, and the way we experience science - especially biological science - is predominantly through visualizations. From beautiful immunofluorescence stainings to western blot bands, going through action potential recordings, scientists look at data before anything else....
Single Cell Genomics data visualization UMAP dimensionality reduction Bioinformatics Computational method Rstats
Ali Hakimzadeh
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Decoding Metabarcoding: A Look at Data Processing Software Suites and Pipelines (part2)

Ali Hakimzadeh
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Aidan Lakshman
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Genomics in R, Part 3: Gene Calling and Annotation

Genomics in R, Part 3: Gene Calling and Annotation

Suppose you've sent out some strains/samples/whatever for sequencing, and you've just received a fresh dump of sequencing data files. How do you go about finding what's in that sequence? Where do the genes start and end? How do we take a string of nucleotides/amino acids and convert it to real gene names like rpoB or BRCA1?...
Aidan Lakshman
2 months ago
Method

Genomics in R, Part 2: Phylogenetic Reconstruction